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WatsonWoo's Projects

shinycircos icon shinycircos

an R/shiny application for creation of Circos plot interactively

snakepipes icon snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

stamp icon stamp

Statistical Analysis of Metagenomic Profiles

stamps2019 icon stamps2019

statdivlab's teaching materials for STAMPS @ the MBL in 2019

statsexpressions icon statsexpressions

Tidy Dataframes and Expressions with Statistical Details 📉 📜🔣✅

structure_clumpp_spatial_mapping_r icon structure_clumpp_spatial_mapping_r

Rmarkdown scripts and test files for running STRUCTURE analysis, combining replicates with CLUMPP, and generating assignment barplots and spatial interpolation of ancestry coefficient

structurepipelines icon structurepipelines

Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)

superheat icon superheat

An r package for generating beautiful and customizable heatmaps

table2itol icon table2itol

Generating iToL annotations from Spreadsheet or CSV files

tableone icon tableone

R package to create "Table 1", description of baseline characteristics with or without propensity score weighting

tidytree icon tidytree

:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation

treedata-book icon treedata-book

:books: a complete reference book for treeio, tidytree and ggtree packages

treeio-1 icon treeio-1

:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output

umi-tools icon umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

vcftools icon vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

veusz icon veusz

Veusz scientific plotting application

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