walterlab-irna / knime-trackmate-plugin

A collection of ImageJ2 plugins for use with KNIME

fmi-ij2-plugins

Installation in KNIME

To use these plugins in KNIME, please activate the update site https://community.knime.org/download/ch.fmi.knime.plugins.update/ as well as the KNIME Image Processing Nightly Builds.

Manual installation in KNIME

If you want to install this plugin manually via the KNIME ImageJ2 integration, you'll have to install the fmi-ij2-plugins jar file as well as all the dependencies listed below.

1. Install fmi-ij2-plugins.jar from the latest release via File > Preferences into KNIME > Image Processing Plugin > ImageJ2 Plugin Installation.

2. The following additional files (dependencies) are required:

Project	Download jar from maven.imagej.net
AnalyzeSkeleton_	AnalyzeSkeleton_-3.4.2.jar
Descriptor_based_registration	Descriptor_based_registration-2.1.7.jar
Fiji_Plugins	Fiji_Plugins-3.1.1.jar
fmi-trackmate-addons	fmi-trackmate-addons-0.1.2.jar
guava	guava-21.0.jar
jdom2	jdom2-2.0.6.jar
jgrapht-core	jgrapht-core-1.4.0.jar
jts-core	jts-core-1.18.1.jar
legacy-imglib1	legacy-imglib1-1.1.9.jar
mpicbg	mpicbg-1.4.1.jar
SPIM_Registration	SPIM_Registration-5.0.21.jar
TrackMate_	TrackMate_-6.0.1.jar
TrackMate_extras	TrackMate_extras-0.0.4.jar