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attila's Issues

File is not accessible

Hi @Cardosaum can you help me to solve this? I only will be able to do it in December. If you can help before it, I would appreaciatte it. Thanks in advance!

From a coleague:

I'm trying to use the ATTILA software described in DOI: 10.1177/1177932220915240, however it returns with "Could not create analysis report".

The vherror.log returns:

grep: /home/andreas/Downloads/ngsdatamono/VH/SelectedSequences/vhlist10numbered.fasta: No such file or directory
chmod: cannot access '/home/andreas/Downloads/ngsdatamono/Report/vhdiffproportion.R': No such file or directory
Can't exec "/home/andreas/Downloads/ngsdatamono/Report/vhdiffproportion.R": No such file or directory at ATTILASymLinks/autoiganalysis3.pl line 304.
Command line argument error: Argument "query". File is not accessible: `/home/andreas/Downloads/ngsdatamono/VH/SelectedSequences/vhlist10numbered.fasta'
grep: /home/andreas/Downloads/ngsdatamono/VH/InitialRound/pt-H_S47_L001_R1_001nt.fasta: No such file or directory
grep: /home/andreas/Downloads/ngsdatamono/VH/InitialRound/pt-H_S47_L001_R1_001aafreq.txt: No such file or directory
grep: /home/andreas/Downloads/ngsdatamono/VH/FinalRound/m1_S48_L001_R1_001nt.fasta: No such file or directory
grep: /home/andreas/Downloads/ngsdatamono/VH/FinalRound/m1_S48_L001_R1_001aafreq.txt: No such file or directory
grep: /home/andreas/Downloads/ngsdatamono/VH/SelectedSequences/vhenriched.fasta: No such file or directory
grep: /home/andreas/Downloads/ngsdatamono/VH/SelectedSequences/vhlist10numbered.txt: No such file or directory

Can you please help me with how I can correct this?

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