Coder Social home page Coder Social logo

vrgrouprwth / insite Goto Github PK

View Code? Open in Web Editor NEW
2.0 3.0 5.0 4.99 MB

Insite - A Pipeline Enabling In-Transit Access To Neural Simulation

Home Page: https://vrgrouprwth.github.io/insite/

License: Apache License 2.0

Python 23.86% Dockerfile 0.16% Shell 0.39% CMake 22.95% C++ 52.56% C 0.08%
arbor in-situ in-transit nest neural simulation tvb

insite's People

Contributors

acdemiralp avatar babsey avatar marcelkrueger avatar soehrl avatar timonroemer avatar

Stargazers

 avatar  avatar

Watchers

 avatar  avatar  avatar

insite's Issues

[bug] lastFrame of activity request

When the simulation is finished and the frontend requests the last frame from access node.
The lastFrame indicates that there is no further data after this request.
But the lastFrame seems not working correctly. It only shows false.

From and To filter for spikes

The time based filtering for spikes does not work. Even if to and from parameter are provided the returned spikes are always all the spikes that are in the ring buffer.

First review, first issues.

Hello all,

I am using insite for my project to show a small demo of plotting of spike events.
For all of these issues, I used the develop branch.

docker-compose run
There, I tried setup these containers according to the instruction (https://github.com/VRGroupRWTH/insite/tree/develop).
First I executed this command: docker-compose up --build then I entered the command: docker-compose run insite-nest-module /example/brunel_simulation.py.
It works well but it produces this 500 Internal Server Error, when I call a request of localhost:8080/nest/spikes.
So, I keep starting insite with docker-compose up --build. It works well.

spikes of populations
Next issue, I am able to gather spikes from localhost:8080/nest/spikes. But for different dot colors of spikes in populations, I call ids of spikes localhost:8080/nest/populations, then I want to request spikes for different populations, it returns all spikes instead of the corresponding populations. As example, I called localhost:8080/nest/population/$5104784/spikes.

spikes from specific time
Anyway, I collected all spike but I would like to get spikes of a time window. You implemented from and to arguments.
I assume these arguments set the time window of getting spikes. When I call localhost:8080/nest/spikes?from=50&to=90. It return spikes from 0 to 90. I think to argument works but from argument doesn't.

I summarized these issues:

  • docker-compose run
  • spikes of populations
  • spikes from specific time.

Expose NEST server

Expose NEST server in the docker build such that both the Insite access node and NEST server are reachable from outside

[DESIGN] NEST Monitoring Interface Functionality

List of NEST & Insite properties/metrics that would be useful to query via Insite:

  • Ringbuffer of population rates
  • memory usage
  • CPU usage
  • power usage
  • spikes per process (current load of communication structure)
  • pyNest timers (duration last communication step, ...)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.