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scipy

Scipy library main repository

scopyon

:microscope: Monte Carlo simulation toolkit for bioimaging systems

siamxt

Simple iamxt toolbox

sift_pyocl

An implementation of SIFT on GPU with OpenCL

simple_sim_fusion_demo

Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution

simpleitk-notebooks

ipython notebooks for learning how to use SimpleITK

singularity_recipies

LUNARC Singularity repos

spimagine

OpenCL accelerated volume rendering / processing in Python

splot

statistical plots based on bokeh, utlizing pandas, numpy and scipy

ssd_keras

A Keras port of Single Shot MultiBox Detector

ssd_keras-1

Port of Single Shot MultiBox Detector to Keras

ssi-code

Image Deconvolution via Noise-Tolerant Self-Supervised Inversion

static-sites-with-sphinx-and-markdown-course

Code and other materials from our Static Sites with Sphinx and Markdown course

storefact

A factory for simplekv-Store-based storage classes.

storm-control

Microscope control software

tempesta

Control software for Testa Lab's MoNaLISA fluorescence microscope @SciLifeLab. Tempesta is an adaption of Tormenta (github.com/fedebarabas/tormenta)

tensorwatch

Debugging, monitoring and visualization for Python Machine Learning and Data Science

tf_unet

Generic U-Net Tensorflow implementation for image segmentation

tifffolder

Easily parse/access a subset of data from a folder of TIFFs

tiler

👷 Build images with images

tissueripper

A simple algorithm to create a nice "expanded" visualization of 3D single-cell segmentations of tissues imaged with confocal fluorescence microscopy.

tools

Things we use regularly

tormenta

Measurement control and analysis for super-resolution localization fluorescence microscopy

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

tracktree

Nice visualization of timecourse data obtained from tracking dividing/splitting objects.

trailmap

tsdz2

Tongsheng TSDZ2 information collection

tsdz2-smart-ebike

Flexible OpenSource firmware for TongSheng TSDZ2 mid drive ebike motor and pheriperals

tsdz2-smart-ebike-compatible-with-original-vlcd6-display

This project is based on the TSDZ2-Smart-EBike repository, but is also compatible with the original VLCD6 display (VLCD5 and HX18 not tested).

tsdz2_original_firmware

Tongsheng TSDZ2 350W version Original Firmware