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pyensembl

Python interface to ensembl reference genome metadata

reference_data

Reference data version tracking for https://github.com/umccr/umccrise

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

seqr

web-based analysis tool for rare disease genomics

sequana

Sequana: a set of Snakemake NGS pipelines

simple_sv_annotation

Simplify snpEff annotations for interesting cases

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

superfreq

Analysis pipeline for cancer exomes

targetseq

targqc

Alignment coverage analysis tool

telotest

Python and bioinformatics code interview

test_ci

Tiny toy repo to test CI builds/tests/packaging/publishing

tsvfmt

Tab-separated file viewer for command line

tsvtools

Utilities for tab-separated files: view, filter, reorder

umcaw

nf-core based Cancer Analysis Workflow

umccrise

Bcbio results umccrization

vardict

VarDict

venn

Creating js-based Venn diagrams for BED and VCF files intersection

versionpy

Small utility to version and release your tools

vifi

Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.

warp

WDL Analysis Research Pipelines

wdl-workflows

Configuration file templates to run WDL workflows with Cromwell