vladsavelyev Goto Github PK

alphatab

alphaTab is a cross platform music notation and guitar tablature rendering library.

awesome-nextflow

A curated list of nextflow based pipelines

az_orthofinder

A tool for finding groups of orthologous genes in bacterial sequences

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

bed_annotation

Assign gene names to regions in a BED file

bedanno

Assign gene names to regions in a BED file

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_coursera

Programming assignments on Coursera's Bioinformatics

bitcoin

Playing with bitcoin

bxtools

Tools for analyzing 10X Genomics data

cacao

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

cawdor

Cancer analysis workflow (DNAseq or RNAseq)

circos_plots

clearup

Sample identity validation and mix-up check

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

computer_vision

concordance

Concordance between variant callers

conda-publish-action

Github Action to deploy conda package to Anaconda repository

conpair

Concordance and contamination estimator for tumor–normal pairs

cpsr

Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of germline variants in cancer

crosstalk

Inter-htmlwidget communication for R (with and without Shiny)

cyvcf2

cython + htslib == fast VCF and BCF processing

deeplearning

Learning machine learning

devdays

Web-platform for AU Dev Days developed in AU Dev Days

dotfiles

~vladsaveliev dotfiles for backup and sychronisation

ed_grep

Implementing grep from ed exercise

exac_browser

Browser for ExAC consortium data

gatk-sv

genologics

Python interface to the GenoLogics LIMS server via its REST API.

gnomad-browser

JavaScript tools for exploring genomic data