vivo-project / jenatools Goto Github PK

Describe the bug
I get a null pointer exception when exporting tdbContentModels from VIVO 1.13 using jena3tools. Running time java -jar ./bin/jena3tools.jar -e -f -o nq -d . produces

Exception in thread "main" java.lang.NullPointerException
   at org.vivoweb.tools.ApplicationStores.writeContent(ApplicationStores.java:240)
   at org.vivoweb.tools.JenaCli.main(JenaCli.java:65)

To Reproduce
Steps to reproduce the behavior:

1. Create a VIVO directory
   • /home $ mkdir VIVO
2. Cd into the VIVO directory
   • /home $ cd VIVO
3. Clone VIVO
   • /home/VIVO $ git clone https://github.com/vivo-project/VIVO.git --branch vivo-1.13.0
4. Clone Vitro
   • /home/VIVO $ git clone https://github.com/vivo-project/Vitro.git --branch vitro-1.13.0
5. Build VIVO
   • /home/VIVO $ mvn clean package -s installer/example-settings.xml
6. Start VIVO Container
   • /home/VIVO $ docker compose up -d
7. Wait for VIVO application to finish initial startup
8. Stop the VIVO container
   • /home/VIVO $ docker compose stop vivo
9. Cd into the vivo-home directory
   • /home/VIVO $ cd vivo-home
10. Create a copy of runtime.properties in the vivo-home directory.
    • /home/VIVO/vivo-home $ cp config/runtime.properties runtime.properties
11. Export using jena3tools
    • /home/VIVO/vivo-home $ time java -jar ./bin/jena3tools.jar -e -f -o nq -d .

Expected behavior
Running jena3tools creates a dumps directory containing the export (content.nq).

Screenshots

Environment (please complete the following information):

• OS: Mac Ventura 13.0
• Apache Tomcat/9.0.65
• VIVO version 1.13