vivarium-collective Goto Github PK
Name: Vivarium Collective
Type: Organization
Bio: home of the vivarium core engine and project ecosystem
Name: Vivarium Collective
Type: Organization
Bio: home of the vivarium core engine and project ecosystem
compositional type schemas
visualization tool for bigraph schema
OpenAI and LLM browser based biological modeling and simulation assistant.
Core implementations of simulator processes using the process-bigraph Process API
REST API which interacts with the biosimulator-processes tooling.
generalized kinetic rate laws
process-bigraph emitter with MongoDB
A Smoldyn based wrapper of Process Bigraphs
Implementing the COMETS modeling methodology with Vivarium.
An interface to allow Vivarium to simulate Chemical Reaction Networks (CRNs) using the Bioscrape package and to automatically create ports between CRNs.
A Vivarium wrapper for BioSimulators
A collection of models for simulating cells with Vivarium.
a process for composing cellpack into vivarium simulations
Multi-scale model of E. coli chemotaxis
A vivarium process wrapper for the COBRApy FBA library
Core Interface and Engine for Vivarium
Vivarium processes for 2D multi-cell physics
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