Use Python >= 3.7
cd into MIScnn and run "python setup.py install" for ggo segmentation libraries
run "pip install git+https://github.com/JoHof/lungmask" for the lobe segmentation libraries
create inputs and predictions folders in the root directory where the main script is.
PRETRAINED MODELS:
- download the pretrained models for ggo segmentation from here https://drive.google.com/file/d/1A_DGVtYr4vQO3hLvrAoMwcCARnlJMmZW/view?usp=sharing
- for the lobe segmentation the models are downloaded the first time you run the script
Run python main.py to see results