Welcome to my GitHub!
- PhD Student @ Sunagawa Lab, ETH Zürich
- Doing research in human gut metagenome and viromics. 🦠
- QIIME 2 Forum moderator.
- MD with passion for data science, software engineering and bioinformatics. 👨🏫
- Open for cooperation. 🤝
Name: Valentyn Bezshapkin
Type: User
Company: Sunagawa Lab @ ETH Zürich
Bio: MD, PhD student in Bioinformatics. Studying massive genomic datasets and producing software to do it better.
Twitter: valentynbez
Location: Zürich, Switzerland
Welcome to my GitHub!
Annotated data.
An analysis and visualization platform for 'omics data
The anvi'o community web page
"Automate the Boring Stuff" Practice Tasks Solutions
🔬 A curated list of awesome LLMs & deep learning strategies & tools in financial market.
Conda recipes for the bioconda channel.
BlackJAX is a sampling library designed for ease of use, speed and modularity.
CAMDA 2021 winning solution for "Literature AI for Drug Induced Liver Injury" challenge
The Data Engineering Cookbook
Data and code behind the articles and graphics at FiveThirtyEight
A curated collection of data science relevant talks, due to the lack of more specific term :)
Deblur is a greedy deconvolution algorithm based on known read error profiles.
Neural Networks for Protein Sequence Alignment
Deep functional residue identification
Python package built to ease deep learning on graph, on top of existing DL frameworks.
Rapid comparison and dereplication of genomes
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks
Archive for Kaggle competitions.
An intuitive library to plot evaluation metrics.
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
Port of Facebook's LLaMA model in C/C++
Archive for my math self-education
WDL Workflow for metagenome assembly
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.