Name: UW-Madison LOCI
Type: Organization
Bio: Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri
Twitter: UWMadisonLOCI
Location: Madison, WI, USA
Blog: https://loci.wisc.edu
UW-Madison LOCI's Projects
LOCI 4D Software Suite [DISCONTINUED]
Arduino library for the 972B Vacuum Pressure Transducer.
Adaptive colocalization algorithms
Adaptive Optics
Registration of histological images using stitching and registration plugins in FIJI via PyImageJ
Back projection code running on the GPU
Based on QuPath extension template - for basic tiling with no overlap resolution
Mike's test for 0.4.x extension
Lecture notes and materials from LOCI Coding Club programmer meetings.
Tools for automated alignment and analysis of collagen fibers
Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue
[RETIRED] Maven plugin for generating C++ proxy classes for a Java library
Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)
Jupyter Dashboards for MicroManager OpenScan-TimeTagger Operation and SmartMicroscope Modules
A Deep Zoom plugin for ImageJ
WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.
EBEAM System GUI
eliceirilab.org -> loci.wisc.edu
Collaborative project with Exploratorium on real-time identifying and tracking fish samples under microscope
FIbeR Extraction (FIRE) - A tool for extracting network architecture from 3D, confocal images of biopolymer networks
Controlling a Flamingo microscope from Python
MATLAB code for analyzing FLIM data
This is a code for post processing FLIM data exported from SPCImage
Examples for using FLIMLIB Python Interface
Server application for flow cytometry with WiscScan
[RETIRED] WiscScan/UW-Forward integration
Code to identify and classify fusion events
Slides for the semi-regular LOCI Git workshop
Backs up all GitHub-stored information about a repository to a dedicated branch.