uw-loci Goto Github PK

4d-software-suite

LOCI 4D Software Suite [DISCONTINUED]

adaptive-coloc

Adaptive colocalization algorithms

adaptive-optics

Adaptive Optics

automatic-histology-registration-pyimagej

Registration of histological images using stitching and registration plugins in FIJI via PyImageJ

back-project-gpu

Back projection code running on the GPU

basic-stitching

Based on QuPath extension template - for basic tiling with no overlap resolution

basicstitching

Mike's test for 0.4.x extension

coding-club

Lecture notes and materials from LOCI Coding Club programmer meetings.

collagen-alignment-analysis

Tools for automated alignment and analysis of collagen fibers

collagen-fiber-metrics

Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue

cppwrap-maven-plugin

[RETIRED] Maven plugin for generating C++ proxy classes for a Java library

curvelets

Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

dashboardsformm

Jupyter Dashboards for MicroManager OpenScan-TimeTagger Operation and SmartMicroscope Modules

deep-zoom-plugin

A Deep Zoom plugin for ImageJ

demo_wsi_superres

WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.

ejb-hessian-fht

eliceirilab.org

eliceirilab.org -> loci.wisc.edu

exploratorium

Collaborative project with Exploratorium on real-time identifying and tracking fish samples under microscope

fiber-extraction

FIbeR Extraction (FIRE) - A tool for extracting network architecture from 3D, confocal images of biopolymer networks

flamingo_control

Controlling a Flamingo microscope from Python

flim-tool

MATLAB code for analyzing FLIM data

flimanalysistool

This is a code for post processing FLIM data exported from SPCImage

flimlib_python_examples

Examples for using FLIMLIB Python Interface

flow-cytometry

Server application for flow cytometry with WiscScan

forward-cron-job

[RETIRED] WiscScan/UW-Forward integration

fusion-events

Code to identify and classify fusion events

git-workshop

Slides for the semi-regular LOCI Git workshop

github-backup-java

Backs up all GitHub-stored information about a repository to a dedicated branch.

gnn-pccp

Graph neural networks for PDAC vs CP in histology

he_shg_synth_workflow

Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis