ignore.case=TRUE leads to incorrect 20Q4 copyNumber data about depmap

[allisonvuong]

Hi @lgatto, @tfkillian what do you guys think about PR #62 as a solution to this bug?

[tfkillian]

Indeed, Allison, you are correct. I will have to modify the data loading function to prevent this.

[allisonvuong]

Ok, great! Please also see the mutationCalls bug as indicated in Pull Request #62.

[tfkillian]

For the time being, while I work on a solution to the loading functions, you can call specific datasets by their EH number, like so: eh <- ExperimentHub(); query(eh, "depmap"); copyNumber <- eh[["EH3961"]] The EH numbers for the latest datasets won't change at least for another 6 weeks until the next Depmap update in late February. I have also attached a list of datasets with their EH numbers.

depmap_datasets_list.xlsx