depmap_copyNumber() function does not return CN data; returns metadata table about depmap

[tfkillian]

@mfper, the depmap_copyNumber function is working fine for me, so I can't replicate this error. Can you let me know what version of R and Bioconductor you are using? I suggest updating R to the latest dev version. If this fails to resolve the error, please use the following code to access the most recent version of the copyNumber dataset:

eh <- ExperimentHub::ExperimentHub(); AnnotationHub::query(eh, "depmap"); copyNumber <- eh[["EH7555"]]

[mfper]

Hi tfkillian,

Following the vignette I had previously manageed to get the CNs with the code that you pasted in your reply.

In fact, now when I try it, depmap_copyNumber() works.

I recently updated to R v4.2.2 so I suppose that's why.

Unfortunately I am not sure which version I was using before the update.

Kind regards,

MFP