turagalab Goto Github PK

caffe-janelia

decode

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

decode_fish

dvidsparkservices

Spark implemented EM reconstruction software workflows

dvision

Python client for the DVID database

flybody

MuJoCo fruit fly body model and reinforcement learning tasks

flyem-dockerfiles

Docker Files for Fly EM Software

flyvis

A connectome constrained deep mechanistic network (DMN) model of the fruit fly visual system

fouriernet

Implementation of Fourier convolution and FourierNet/FourierUNet in JAX and PyTorch

greentea-docker

greentea_training_template

gunpowder

Data loading DAG for Greentea.

gunpowder_examples

Example scripts for gunpowder training and prediction.

ipp-tools

Collection of IPyParallel tools and helper scripts

jhu-janelia-2023-ml-demo

Demo notebooks for JHU bootcamp at Janelia 2023

malis

MALIS structured loss function for supervised learning of segmentation and clustering

msri2018_pupilcodedmicroscope

MSRI 2018 summer school (Group 7)

nyroglancer

jupyter notebook extension to visualize numpy arrays with the neuroglancer

optoconn

Active causal connectivity inference

pygreentea

pygt_models

slurm_cluster

Configuration files, scripts, and howtos for using the slurm cluster.

snapshotscope

Differentiable 4f microscope/phase mask simulation

spark-janelia

Scripts for using Spark on Janelia's HPC

splinepsf

stcnn

spatiotemporal convnet for modeling visual neuron responses

syntist_progress_report

Show progress and current results in syntist project

system_setup

Scripts and docs describing system configuration.

turagalab.github.io

vae

Model-agnostic variational autoencoder tools