The barely_json from torfsen

Allow parsing "json" which is wrapped in "[ ]", not "{ }"

Would it be possible the library to parse json which is wrapped in [ ], not { }, like this file (from the settings file of Sublime Text, if you're interested)):

[
    {
        "caption": "Word Wrap: Toggle",
        "command": "toggle_setting",
        "args": {"setting": "word_wrap"}
    },
    {
        "caption": "Convert Case: Upper Case",
        "command": "upper_case"
    },
    { "caption": "Indexing Status", "command": "show_progress_window" },
]

AttributeError: module 'collections' has no attribute 'MutableMapping'

I'm running Python 3.10.6 on Ubuntu, and trying out barely_json for the first time. I just installed barely_json-0.1.1 with pip. Importing barely_json gives the following error:

Traceback (most recent call last):
  File "/home/velle/a/parkscraper/cmdGetJsonToQueue.py", line 1, in <module>
    import barely_json
  File "/home/jdoe/.virtualenvs/testenv/lib/python3.10/site-packages/barely_json/__init__.py", line 15, in <module>
    from pyparsing import *
  File "/home/jdoe/.virtualenvs/testenv/lib/python3.10/site-packages/pyparsing.py", line 943, in <module>
    collections.MutableMapping.register(ParseResults)
AttributeError: module 'collections' has no attribute 'MutableMapping'

String escapes are not parsed correctly

JSON with no delimiter

Hey there,

It's a great library you made :-) And it is a good idea to base it on a grammar processor instead of a simple homemade state machine.

I would like to make the library work on malformed JSON with absolutely no delimiter:

badjson = '''{"ghosting_calculation": {"process_types": ["T1"  "T2"  "FLAIR"  "SWI" ]    "mask_ap": "qc_templates/maskAP.nii.gz"  "scan_type_order": ["T1"  "FLAIR"  "T2" ]    "mask_side": "qc_templates/maskSide.nii.gz"}  "segmentation": {"scan_type_order": ["T1"  "FLAIR"  "T2" ]    "brain_mask": "qc_templates/wbrainmask.nii.gz"}  "dicom2nifti": {"process_types": ["T1"  "T2"  "FLAIR"  "SWI"  "DTI"  "b0"  "rs_fMRI" ]    "deface": true  "deface_types": ["T1"  "T2"  "FLAIR"  "SWI"  "T2*" ]    "overwrite": false}  "tbi_dti_qc": {"check_gradient_table": {"process_types": ["DTI" ]  }  "dti_tensor_residual_calculation": {"process_types": ["DTI" ]  }  "temporal_snr": {"process_types": ["DTI" ]    "brain_mask": "qc_templates/wbrainmask.nii.gz"}  "percentage_signal_change": {"process_types": ["DTI" ]    "brain_mask": "qc_templates/wbrainmask.nii.gz"  "mask_threshold": 0.9}  "input_data": {"process_types": ["DTI" ]    "data_types": ["NIFTI"  "BVAL"  "BVEC" ]  }  "fa_md_feature_estimation": {"process_types": ["DTI" ]  }}  "dicom_qc": {"process_types": ["T2"  "T1"  "FLAIR"  "DTI"  "SWI"  "rs_fMRI" ]    "center": "dicom_qc"  "server_name": "neuro-imaging.center-tbi.eu"}  "smoothed_image_statistics": {"process_types": ["T1"  "T2"  "FLAIR" ]  }  "cnr_calculation": {"process_types": ["T1"  "T2"  "FLAIR"  "DTI" ]    "noise_mask": "qc_templates/maskNoise.nii.gz"  "mask_threshold": 0.9}  "scan_type_translation": {"server_name": "neuro-imaging.center-tbi.eu"}  "input_data": {"proce ss_types": ["T1"  "T2"  "FLAIR"  "SWI"  "DTI"  "b0"  "rs_fMRI" ]    "data_types": ["DICOM"  "NIFTI"  "BVAL"  "BVEC" ]  }  "tbi_report": {}  "tbi_fmri_qc": {"fmri_motion_detection": {"process_types": [  "rs_fMRI" ]    "translation_threshold": 3  "rotation_threshold": 3}  "input_data": {"process_types": ["rs_fMRI" ]    "data_types": ["NIFTI" ]  }  "percentage_signal_change": {"process_types": ["rs_fMRI" ]    "brain_mask": "qc_templates/wbrainmask.nii.gz"  "mask_threshold": 0.9}  "temporal_snr": {"process_types": ["rs_fMRI" ]    "brain_mask": "qc_templates/wbrainmask.nii.gz"}  "fmri_snr_calculation": {"process_types": ["rs_fMRI" ]  }}  "head_coverage": {"process_types": ["T1"  "T2"  "FLAIR"  "SWI"  "DTI"  "b0"  "rs_FMRI" ]    "atlas_mask": "NormalSharpAtlas/mni_icbm152_nlin_asym_09a/mni_icbm152_t1_tal_nlin_asym_09a_mask.nii.gz"}  "registration": {"process_types": ["T1"  "T2"  "FLAIR"  "SWI"  "DTI"  "b0"  "rs_fMRI" ]    "scan_type_order": ["T1"  "FLAIR"  "T2" ]  }  "gm_wm_statistics": {"process_types": ["T1"  "T2"  "FLAIR" ]  }  "snr_calculation": {"process_types": ["T1"  "T2"  "FLAIR"  "DTI" ]    "noise_mask": "qc_templates/maskNoise.nii.gz"  "mask_types": {"SWI": "CSF"  "DTI": "CSF"  "T2": "CSF"  "T1": "WM"  "B0": "CSF"  "FLAIR": "GM"}  "mask_threshold": 0.9}  "upload_results": {}  "protocol_check": {"validate_order": true  "sequence": ["T2"  "T1"  "FLAIR"  "SWI"  "DTI"  "DTI"  "rs_fMRI" ]  }}'''

This peculiar bug might happen when the host software generating this json tries to export this json data as one field of a CSV file export with the default comma delimiter, in this case, all commas will inside the JSON field will be stripped out.

Do you have any idea how to fix that?

Thanks a lot!

torfsen / barely_json Goto Github PK

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barely_json's Issues

Allow parsing "json" which is wrapped in "[ ]", not "{ }"

AttributeError: module 'collections' has no attribute 'MutableMapping'

String escapes are not parsed correctly

JSON with no delimiter

Floats are not parsed correctly

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