Topic: persistent-homology Goto Github

👇 Here are 91 public repositories matching this topic...

aleskunder / topology_loop_caller
persistent-homology,Chromatin loop caller using Topological Data Analysis based on Hi-C data
User: aleskunder
bioinformatics bioinformatics-tool chromatin chromatin-loops hi-c hic-analysis persistent-homology topological-data-analysis

borgwardtlab / fmri_cubical_persistence
persistent-homology,Code of our NeurIPS 2020 publication 'Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence'
Organization: borgwardtlab
tda topological-data-analysis persistent-homology cubical-complexes cubical-complex neurips-2020 neurips

borgwardtlab / neural-persistence
persistent-homology,Code for the paper 'Neural Persistence: A Complexity Measure for Deep Neural Networks Using Algebraic Topology'
Organization: borgwardtlab
algebraic-topology persistent-homology deep-learning neural-networks iclr2019 iclr machine-learning

borgwardtlab / p-wl
persistent-homology,A Persistent Weisfeiler–Lehman Procedure for Graph Classification
Organization: borgwardtlab
weisfeiler-lehman topological-data-analysis graph-classification persistent-homology graph-kernels machine-learning

borgwardtlab / togl
persistent-homology,Topological Graph Neural Networks (ICLR 2022)
Organization: borgwardtlab
Home Page: https://openreview.net/pdf?id=oxxUMeFwEHd
persistent-homology graph-learning iclr2022 machine-learning graph-classification node-classification pytorch pytorch-geometric

borgwardtlab / topological-autoencoders
persistent-homology,Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt.
Organization: borgwardtlab
topological-data-analysis autoencoder tda persistent-homology

c-hofer / torchph
persistent-homology,The essence of my research, distilled for reusability. Enjoy 🥃!
User: c-hofer
Home Page: https://c-hofer.github.io/torchph/
pytorch deep-learning persistent-homology topological-data-analysis gpu differentiable-persistent-homology

dashtiali / vectorisation-app
persistent-homology,This web app can be used to compute and visualize featurized PH barcodes.
User: dashtiali
Home Page: https://persistent-homology.streamlit.app
persistent-homology topological-data-analysis

davidlapous / multipers
persistent-homology,Scikit-style multiparameter persistent homology.
User: davidlapous
persistent-homology topological-data-analysis tda python cpp cython neurips-2023

davidlapous / multipers-signed-measure
persistent-homology,Scikit-style multiparameter persistent homology, using signed measure and their representation for machine learning.
User: davidlapous
persistent-homology python tda topological-data-analysis multiparameter-persistence

giotto-ai / pyflagser
persistent-homology,Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).
Organization: giotto-ai
persistent-homology algebraic-topology computational-topology topological-data-analysis

gjkoplik / pers-hom-examples
persistent-homology,A placeholder repo to hold widgets for my Towards Data Science persistent homology medium article.
User: gjkoplik
Home Page: https://gjkoplik.github.io/pers-hom-examples/
persistent-homology tda

gudhi / gudhi-devel
persistent-homology,The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.
Organization: gudhi
Home Page: https://gudhi.inria.fr/
topology tda topological-data-analysis python persistent-homology cpp17

irishryoon / dowker_persistence
persistent-homology,Code for computing Dowker persistence diagrams
User: irishryoon
dowker-complexes persistent-homology topological-data-analysis

karhunenloeve / topodata
persistent-homology,Lecture notes for Topological Data Analysis.
User: karhunenloeve
lecture-notes persistent-homology topological-data-analysis

markolalovic / tda-digits
persistent-homology,Topological features applied to the digits data set
User: markolalovic
Home Page: https://markolalovic.github.io/tda-digits/
persistent-homology dionysus topological-data-analysis topological-features machine-learning

marrlab / shapr_torch
persistent-homology,SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"
Organization: marrlab
Home Page: https://shapr.topology.rocks
cubical-complexes deep-learning image-reconstruction persistent-homology pytorch segmentation topological-data-analysis topological-machine-learning

mtsch / persistencediagrams.jl
persistent-homology,Persistence Diagrams in Julia
User: mtsch
Home Page: https://mtsch.github.io/PersistenceDiagrams.jl/dev
persistent-homology persistence-diagrams bottleneck-distance wasserstein-distance

mtsch / ripser.jl
persistent-homology,Simple Ripser wrapper in Julia
User: mtsch
julia tda homology topological-data-analysis computational-topology persistent-homology

mtsch / ripserer.jl
persistent-homology,Flexible and efficient persistent homology computation.
User: mtsch
Home Page: https://mtsch.github.io/Ripserer.jl/dev/
persistent-homology topological-data-analysis homology cohomology tda ripser julia topology

nebneuron / simplicial.jl
persistent-homology,A package for various computations with simplicial complexes, combinatorial codes, directed complexes and their filtrations.
Organization: nebneuron
simplicial-complexes combinatorial-codes directed-complexes homology-computation persistent-homology polar-complex codewords tda dowker-complexes

nhchristianson / math-text-semantic-networks
persistent-homology,Python code for construction and analysis of semantic networks from text.
User: nhchristianson
community-detection concept-extraction concept-map keyphrase-extraction linear-algebra mathematics-texts networks persistent-homology python semantic-networks topological-data-analysis

oleg-kachan / diagram2vec
persistent-homology,Vector Representations of Persistence Diagrams
User: oleg-kachan
tda topological-data-analysis persistent-homology machine-learning

olivergafvert / topcat
persistent-homology,Topcat - a library for multiparameter persistence
User: olivergafvert
persistence persistent-homology multiparameter

ondraganov / chromatic-tda
persistent-homology,Tool to compute six-packs of persistence diagrams for chromatic point clouds [packaged on PyPI]
User: ondraganov
Home Page: https://pypi.org/project/chromatic-tda/
alpha-complex persistent-homology spatial-analysis tda topological-data-analysis

pseudomanifold / aleph
persistent-homology,A library for exploring persistent homology
User: pseudomanifold
Home Page: https://pseudomanifold.github.io/Aleph/
persistent-homology topological-data-analysis c-plus-plus-11 persistence machine-learning

pseudomanifold / enchiridion-tda
persistent-homology,An enchiridion for instructing mortals in the hidden arts of topological data analysis
User: pseudomanifold
topology persistent-homology data-analysis graph-kernels

pseudomanifold / pyper
persistent-homology,Python-based persistent homology algorithms
User: pseudomanifold
topological-data-analysis persistent-homology

pseudomanifold / tml
persistent-homology,Experiments in topological machine learning
User: pseudomanifold
machine-learning machine-learning-algorithms topology persistent-homology

ripser / ripser
persistent-homology,Ripser: efficient computation of Vietoris–Rips persistence barcodes
Organization: ripser
Home Page: http://ripser.org
persistent-homology computational-topology topological-data-analysis

rivettda / rivet
persistent-homology,RIVET is a tool for Topological Data Analysis, in particular two-parameter persistent homology.
Organization: rivettda
topological-data-analysis persistent-homology data-science data-visualization algebraic-topology

rodrgo / openph
persistent-homology,Parallel reduction of boundary matrices for Persistent Homology with CUDA
User: rodrgo
persistent-homology topological-data-analysis parallel-computing cuda gpu-computing numerical-computation

rrrlw / ripserr
persistent-homology,R package porting Ripser-based persistent homology calculation engines from C++ via Rcpp. Currently ports Ripser (Vietoris-Rips complex) and Cubical Ripser (cubical complex).
User: rrrlw
Home Page: https://rrrlw.github.io/ripserr/
ripser topological-data-analysis persistent-homology topology cubical-complex vietoris-complex rips-complex rcpp r cpp

rrrlw / tdastats
persistent-homology,R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
User: rrrlw
Home Page: https://rrrlw.github.io/TDAstats
topological-data-analysis homology-calculations cran ripser ggplot2 pipeline r persistent-homology tda homology

rrrlw / visual-tda
persistent-homology,R code associated with preprint proposing flat persistence diagram for better visualization of persistent homology.
User: rrrlw
topological-data-analysis persistent-homology data-visualization data-visualisation r

salimandre / unsupervised-image-segmentation-persistent-homology
persistent-homology,Unsupervised image segmentation by applying topological data analysis techniques.
User: salimandre
tda persistent-homology traversal-algorithm persistence-diagrams rips-vietoris-complexes covering-tree image-segmentation unsupervised-learning gudhi

scikit-tda / cechmate
persistent-homology,Custom filtration constructors for Python
Organization: scikit-tda
Home Page: http://cechmate.scikit-tda.org
custom-filtrations filtration persistence-diagrams persistent-homology phat tda

scikit-tda / pervect
persistent-homology,Vectorization of persistence diagrams and approximate Wasserstein distance
Organization: scikit-tda
persistent-homology python topological-data-analysis topology vectorizer wasserstein-metric

scikit-tda / ripser.py
persistent-homology,A Lean Persistent Homology Library for Python
Organization: scikit-tda
Home Page: http://ripser.scikit-tda.org
data-science homology persistent-homology ripser tda topological-data-analysis topology

shizuo-kaji / homologycnn
persistent-homology,Homology assisted CNN for image classification
User: shizuo-kaji
tda persistent-homology cnn image-classification

shizuo-kaji / tutorialtopologicaldataanalysis
persistent-homology,Tutorial on Topological Data Analysis
User: shizuo-kaji
tda persistent-homology tutorial jupyter-notebook nlp

siyangj / topological-data-analysis
persistent-homology,TDA starting from Summer 2018
User: siyangj
computational-geometry persistent-homology tda

steenroder / steenroder
persistent-homology,Computation of persistence Steenrod barcodes
Organization: steenroder
Home Page: https://steenroder.github.io/steenroder/
persistent-homology computational-topology applied-algebraic-topology data-science machine-learning

tdaverse / ggtda
persistent-homology,ggplot2 extension to visualize persistent homology
Organization: tdaverse
Home Page: https://tdaverse.github.io/ggtda/
topological-data-analysis r tidyverse ggplot2 persistent-homology visualization ggplot-extension tda persistence-data rstats

tomchaplin / lophat
persistent-homology,Lockfree Persistent Homology Algorithm Toolkit
User: tomchaplin
lock-free persistent-homology python rust topological-data-analysis

topolearn / topo-clustering
persistent-homology,Fast Topological Clustering with Wasserstein Distance (ICLR 2022)
User: topolearn
cluster-analysis complex-networks persistent-homology topological-data-analysis wasserstein-barycenter wasserstein-distance network-representation topological-clustering

topolearn / topo-loss
persistent-homology,Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)
User: topolearn
brain-networks heritability permutation-test persistent-homology topological-data-analysis wasserstein-distance birth-death-decomposition

trneedham / introductiontotopologicaldataanalysis
persistent-homology,
User: trneedham
tda topological-data-analysis persistent-homology

udatg / analogous_bars
persistent-homology,Code for the persistent extension and analogous bars methods of comparing persistence barcodes of clique complexes using a cross-dissimilarity measure.
Organization: udatg
persistent-homology topological-data-analysis eirene

upunaprosk / la-tda
persistent-homology,Code for EACL Workshop paper Can BERT eat RuCoLA? Topological Data Analysis to Explain
User: upunaprosk
Home Page: https://aclanthology.org/2023.bsnlp-1.15
persistent-homology shapley-additive-explanations topological-data-analysis acceptability-judgements barcodes-features glue ripser tda