Topic: md-simulations Goto Github
Some thing interesting about md-simulations
Some thing interesting about md-simulations
md-simulations,Analysis tool for H5MD file (HDF5 format for molecular dynamics simulation data)
User: anyuzx
md-simulations,Molecular dynamics simulation of nano Structures, Materials and Properties using LAMMPS software.
User: bakhshiali
md-simulations,Extracting kinetics from replica exchange molecular dynamics and related methods that produce discontinuous trajectories.
Organization: bio-phys
md-simulations,Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations
Organization: bio-phys
md-simulations,sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.
User: c-sinner
md-simulations,A Python package that aims to characterise the dynamics of local chemical environments from Molecular Dynamics trajectories of proteins and other biomolecules. Public mirror of https://gitlab.jsc.fz-juelich.de/slbio/speadi.
Organization: fzj-jsc
md-simulations,A mesh free molecular dynamics (MD) simulation for a fluid in an isothermal container
User: gnikit
md-simulations,Tools for running MD simulations in OpenMM
Organization: hekstra-lab
md-simulations,This code adds custom-made amino acids to the GROMACS forcefield directory.
User: kimjc95
md-simulations,How to analyze molecular dynamics data with PyEMMA
Organization: markovmodel
md-simulations,MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store
Organization: molssi
Home Page: https://covid.molssi.org
md-simulations,The simplest usage of the API, $theme: mat.define-theme() defines a theme with default values.
User: randika00
md-simulations,Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.
Organization: rinikerlab
Home Page: https://rinikerlab.github.io/restraintmaker/
md-simulations,Scirpts used for Metainference MD Simulations
Organization: schlessinger-lab
md-simulations,Simulation-Enabled Estimation of Kinetic Rates - Version 2
Organization: seekrcentral
md-simulations,xBFreE is a powerful and versatile tool for computing the Binding Free Energies using a variety of methods across popular Molecular Dynamics programs
Organization: xbfreenergy
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