Topic: denovo Goto Github

👇 Here are 26 public repositories matching this topic...

0-ioniel-0 / guppy_mr
denovo,Repository for scripts used to estimate guppy (Poecilia reticulata) mutation rate.
User: 0-ioniel-0
bam bcftools denovo gatk4 gvcf mutation-rate python samtools vcf

ai4u-ai / ai4chem
denovo,Deep Learning for Chem
Organization: ai4u-ai
deep learning chem bioinformatics drug-discovery denovo

alexarnimueller / lstm_peptides
denovo,Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
User: alexarnimueller
machine-learning peptide-sequences lstm rnn denovo

aradar46 / denovo-assembly-long-read
denovo,Part of BINP29 course
User: aradar46
denovo

berkecagkantoptas / vbt-trioanalysis
denovo,A fast and accurate tool that identifies Mendelian violations in family trios. Resolve variant representation issues in VCF files
User: berkecagkantoptas
Home Page: https://www.biorxiv.org/content/early/2018/01/24/253492
mendelian trio benchmarking variant denovo mutation comparison violations

bgm-cwg / novocaller
denovo,
Organization: bgm-cwg
variant-calling pedigree denovo

compomics / denovogui
denovo,Graphical user interface for de novo sequencing of tandem mass spectra
Organization: compomics
Home Page: http://compomics.github.io/projects/denovogui.html
proteomics de-novo-sequencing graphical-user-interface denovo

hms-dbmi / ramedies
denovo,Statistical models for finding de novo recurrence and compound heterozygosity across rare disease patient cohorts
Organization: hms-dbmi
compound-heterozygous denovo mendelian-genetics rare-disease statistical-genetics

maybelinot / findltr
denovo,De novo identification of LTR retrotransposons
User: maybelinot
denovo ltr retrotransposons

nf-core / bacass
denovo,Simple bacterial assembly and annotation pipeline
Organization: nf-core
Home Page: https://nf-co.re/bacass
nf-core workflow nextflow pipeline genome-assembly bacterial-genomes assembly hybrid-assembly nanopore nanopore-sequencing

nkts007 / research-project
denovo,This repository holds the code and notes during the use of Casanovo as part of my Research Project, as well as links to resources used as part of the Metaproteomic Analysis of my samples.
User: nkts007
bioinformatics-analysis denovo machine-learning metaproteomics peptide-prediction

sarisabban / pose
denovo,A bare metal Python library for building and manipulating protein molecular structures
User: sarisabban
amino-acids bioinformatics computational-biology denovo denovo-design pdb pose protein-design protein-structure topology

sarisabban / ramanet
denovo,Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
User: sarisabban
protein-structure machine-learning pdb dataset neural-network denovo-design denovo protein-design rmsd topology

shamir-lab / recycler
denovo,This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Organization: shamir-lab
assembly-graph plasmid metagenomes recycler denovo assembly circular-sequences

sirius-ms / sirius
denovo,SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Organization: sirius-ms
denovo metabolomics mass-spectrometry java science cheminformatics bioinformatics molecular-structures molecular-formulas ms-spectra

sirius-ms / sirius-libs
denovo,sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Organization: sirius-ms
java-library denovo metabolomics cheminformatics bioinformatics mass-spectrometry molecular-formulas ms-spectra ms-data scientific-computing

thilus / ms-tagger
denovo,Graph-based algorithm for generating peptide tags from MS/MS data
User: thilus
denovo graph peptide-identification tag

tnturnerlab / acorn
denovo,acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
Organization: tnturnerlab
Home Page: https://pubmed.ncbi.nlm.nih.gov/37660114/
denovo genome genomics indel mnv r snv variants

tnturnerlab / diamondsdenovo
denovo,DiamondsDenovo is a tool to calculate enrichment of de novo variants in the genome
Organization: tnturnerlab
denovo genetics genomics

tnturnerlab / gpu_accelerated_de_novo_workflow
denovo,HARE is the GPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
Organization: tnturnerlab
genomics genetics gpu denovo

tnturnerlab / hare
denovo,A de novo variant caller leveraging Parabricks GPU accelerated variant calling
Organization: tnturnerlab
denovo genetics genomics gpu

tnturnerlab / hat
denovo,HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
Organization: tnturnerlab
Home Page: https://pubmed.ncbi.nlm.nih.gov/38175776/
gpu cpu genomics genetics denovo

tnturnerlab / tortoise
denovo,Tortoise is the CPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
Organization: tnturnerlab
genetics genomics cpu denovo

topazape / lstm_chem
denovo,Implementation of the paper - Generative Recurrent Networks for De Novo Drug Design.
User: topazape
chemoinformatics cheminformatics keras python3 machine-learning lstm rnn denovo tensorflow2

topazape / molecular-vae
denovo,Implementation of the paper - Automatic chemical design using a data-driven continuous representation of molecules
User: topazape
chemoinformatics cheminformatics pytorch python3 machine-learning vae denovo

yc386 / orthrus_metaproteomics
denovo,Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets
User: yc386
denovo metaproteomics palaeoproteomics transformer