Topic: bioimage-informatics Goto Github
Some thing interesting about bioimage-informatics
Some thing interesting about bioimage-informatics
bioimage-informatics,Analysis of single molecule localization microscopy. 'pointpattern': statistical analysis. 'image': image processing+analysis+classification
User: albagranados
bioimage-informatics,C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
User: arttumiettinen
bioimage-informatics,SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Organization: ciccalab
Home Page: https://github.com/ciccalab/SIMPLI/wiki
bioimage-informatics,The official deployment of the Digital Slide Archive and HistomicsTK.
Organization: digitalslidearchive
Home Page: https://digitalslidearchive.github.io
bioimage-informatics,A Python toolkit for pathology image analysis algorithms.
Organization: digitalslidearchive
Home Page: https://digitalslidearchive.github.io/HistomicsTK/
bioimage-informatics,CYCASP is a methodology for investigating and understanding (C)olon(Y) growth and (C)ell (A)ttributes at the population level. It couples (SP)atiotemporal changes by relying on two novel data abstractions and a modular algorithm.
User: ghattab
Home Page: https://doi.org/10.3389/fbioe.2018.00017
bioimage-informatics,SeeVIS is a (S)egmentation-fr(ee) (VIS)ualization pipeline for time-lapse image data. It comprises three steps: 1. preprocessing, 2. feature extraction, and 3. an extended version of the space time cube with three novel color mappings adapted to cell colony growth.
User: ghattab
Home Page: https://doi.org/10.1093/bioinformatics/bty889
bioimage-informatics,ViCAR extracts and employs (Vi)sual (C)ues for an (A)daptive (R)egistration of time-lapse image data recorded in microfluidic devices.
User: ghattab
Home Page: https://www.frontiersin.org/articles/10.3389/fgene.2017.00069/full
bioimage-informatics,Track single-cells and profile the cell cycle with PCNA images.
User: jeff-gui
bioimage-informatics,Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub in Bioconductor)
User: kumes
Home Page: https://kumes.github.io/BioImageDbs/
bioimage-informatics,Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Organization: mahmoodlab
Home Page: http://clam.mahmoodlab.org
bioimage-informatics,A vision-language foundation model for computational pathology - Nature Medicine
Organization: mahmoodlab
bioimage-informatics,Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Organization: mahmoodlab
bioimage-informatics,AI-based pathology predicts origins for cancers of unknown primary - Nature
Organization: mahmoodlab
Home Page: http://toad.mahmoodlab.org
bioimage-informatics,CellOrganizer for Docker
Organization: murphygroup
Home Page: http://www.cellorganizer.org
bioimage-informatics,CellOrganizer on Jupyter Notebook
Organization: murphygroup
Home Page: http://www.cellorganizer.org
bioimage-informatics,:whale: Script to build a Singularity image for CellOrganizer
Organization: murphygroup
Home Page: http://www.cellorganizer.org
bioimage-informatics,QuPath - Bioimage analysis & digital pathology
Organization: qupath
Home Page: https://qupath.github.io
bioimage-informatics,A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
User: yu-lab-vt
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