tokami / sensitivedemspecies

Extending the analysis on sensitive species developed by Rindorf et al., (accepted, Journal of Applied Ecology) Are fish sensitive to trawling recovering in the Northeast Atlantic?

SensitiveDemSpecies

Extending the analysis on sensitive species developed by Rindorf et al., (2020, Journal of Applied Ecology) Are fish sensitive to trawling recovering in the Northeast Atlantic? (https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2664.13693)

Analysis based on a population model (Gislason et al., 2008 https://doi.org/10.1093/icesjms/fsn035), a collection of traits, exploitation of demersal fish species (Walker et al., 2017 https://doi.org/10.1093/icesjms/fsw250), and abundances from European trawl surveys (https://datras.ices.dk/)

R Code scripts <load.clean.surveys.R> Downloading data from ICES Datras and cleaning (format and taxonomy) <model.R> Population model to quantify species sensitivity to fishing <abundance.sensitive.R> Developing species abundance indices across surveys for sensitive species <presence.sensitive.R> Developing species presence indices across surveys for sensitive species <autoloess.R> Additional function to automatically optimize loess fits

Results <Sensitive.csv> results from running <model.R> <Abundance.index.spp.pdf> results from running <abundance.sensitive.R> <Presence.index.spp.pdf> results from running <presence.sensitive.R>