tk-21st / latex-to-myst

LaTeX to MyST parser

Hi there 👋

My name is Tingkai Liu, and I'm a NeuroAI researcher at Cold Spring Harbor Laboratory. My research covers a broad range of topics from LLMs, Multimodal Foundation Models to Computational Neuroscience.

latex-to-myst's Issues

Fix logger configuration

Logger option is not being passed from CLI to pan flute.

Some Known Issues as of now

• Figure environment's caption is not always captured. Specifically when the content of the figure environment is not just a single includegraphics (instead is tabular or subfloat or multiple includegraphics).
• Some Divs are not parsed
  • IEEEeqnarray
  • array
  • figure*

Support custom config with yaml file

• As title.
• Extend CLI to be compatible with yaml options.

Improve filter organization

Filter organization would be organized such that each file takes care of one type of elements. CLI should support running selected or all filters.

TypeError: unhashable type: 'Image'

• Latex-to-Myst version: 0.0.1 (but latex2myst --version does not work)
• Python version: 3.10
• Pandoc version: 2.19.2
• Panflute version: 2.2.3
• Operating System: Ubuntu 22.04

Description

latex2myst course.tex course.md
Traceback (most recent call last):
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/main.py", line 186, in <module>
    main()
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/main.py", line 182, in main
    return pf.run_filter(action, doc=doc, finalize=finalize, prepare=prepare)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/io.py", line 227, in run_filter
    return run_filters([action], *args, **kwargs)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/io.py", line 203, in run_filters
    prepare(doc)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/main.py", line 161, in prepare
    doc.walk(get_level)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/base.py", line 274, in walk
    child = child.walk(action, doc, stop_if)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/containers.py", line 85, in walk
    ans = list(chain.from_iterable(ans))
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/containers.py", line 83, in <genexpr>
    ans = ((item,) if type(item) is not list else item for item in ans)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/containers.py", line 81, in <genexpr>
    ans = (item.walk(action, doc, stop_if) for item in self)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/base.py", line 274, in walk
    child = child.walk(action, doc, stop_if)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/containers.py", line 85, in walk
    ans = list(chain.from_iterable(ans))
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/containers.py", line 83, in <genexpr>
    ans = ((item,) if type(item) is not list else item for item in ans)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/containers.py", line 81, in <genexpr>
    ans = (item.walk(action, doc, stop_if) for item in self)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/panflute/base.py", line 282, in walk
    altered = action(self, doc)
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/main.py", line 159, in get_level
    block_levels[e] = level
TypeError: unhashable type: 'Image'
Error running filter /home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/main.py:
Filter returned error status 1
Traceback (most recent call last):
  File "/home/pierre/.pyenv/versions/3.10.7/bin/latex2myst", line 8, in <module>
    sys.exit(main())
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/cli.py", line 106, in main
    subprocess.run(
  File "/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/subprocess.py", line 524, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['pandoc', '/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/macros.tex', 'courseM1_PA_instabilities_turbulence.tex', '-o', 'course.md', '--filter', '/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/main.py', '-t', 'markdown+latex_macros', '--markdown-headings=atx', '--highlight-style', '/home/pierre/.pyenv/versions/3.10.7/lib/python3.10/site-packages/latex_to_myst/pygments.theme', '--standalone']' returned non-zero exit status 83.

Generic directive block writer

As title. Should support any generic directive block.

Provide API for special rules (like macros) for specifying how each directive should be named