Comments (1)
Meltpinkg
commented on July 17, 2024
Hello, @luneangevin
You can install the newest version from pip or GitHub and have another try.
In addition, the parameter "-s" represents the minimum number of reads that support a SV to be reported and the default number is 10. If the individual sequencing depth is low, the parameter should decrease to some degree.
Hope it will help.
Best,
Shuqi
from cutesv.
Related Issues (20)
- Confusing read support for a large deletion HOT 3
- repeat at the SV breakpoint HOT 4
- Supporting gzip ref fasta HOT 2
- Structural variation of species from two different genus
- `--min_size` didn't work HOT 1
- [Question] How are POS, LEN and SEQ of insertions determined HOT 2
- Some bases in the “REF” column are incorrect, and this occurs in INS (insertion) types. HOT 1
- Question about vcf INFO filed HOT 1
- Installation fails HOT 5
- cython is required at build time but not install time HOT 2
- SV with genotype 0/0 HOT 1
- empty pickle for self mapping HOT 1
- cuteSV fails to output the result due to computational resources HOT 1
- Force Calling Error (CuteSV + SURVIVOR) HOT 12
- cutcsv only calls indel HOT 1
- Q: Detection SV by aligning to diploid (not haplotype resolved) genome HOT 2
- Call SV in multiple sample HOT 1
- Missing quality scores QUAL HOT 1
- Does `--batches` affect output? HOT 2
- zero position in vcf HOT 3
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from cutesv.