Comments (1)
tjiangHIT
commented on July 17, 2024
Hello @HFzzzzzzz,
Thank you for using cuteSV.
Based on your description, the coverage of your aln.end.bam may be too small. Please adjust the parameter -s to above 1/6 of your coverage to increase the detection sensitivity. Besides, cuteSV focuses on identifying SVs over 30 bp at least.
Hope this can help you!
Best,
Tao
from cutesv.
Related Issues (20)
- Confusing read support for a large deletion HOT 3
- repeat at the SV breakpoint HOT 4
- Supporting gzip ref fasta HOT 2
- Structural variation of species from two different genus
- `--min_size` didn't work HOT 1
- [Question] How are POS, LEN and SEQ of insertions determined HOT 2
- Some bases in the “REF” column are incorrect, and this occurs in INS (insertion) types. HOT 1
- Question about vcf INFO filed HOT 1
- Installation fails HOT 5
- cython is required at build time but not install time HOT 2
- SV with genotype 0/0 HOT 1
- empty pickle for self mapping HOT 1
- cuteSV fails to output the result due to computational resources HOT 1
- Force Calling Error (CuteSV + SURVIVOR) HOT 12
- Q: Detection SV by aligning to diploid (not haplotype resolved) genome HOT 2
- Call SV in multiple sample HOT 1
- Missing quality scores QUAL HOT 1
- Does `--batches` affect output? HOT 2
- zero position in vcf HOT 3
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