tillahoffmann / coaloracle

Repository for simulated genetic data presented by Nunes and Balding (2010).

Summaries of Genetic Variation

Repository for simulated genetic data presented by Nunes and Balding (2010). See https://paperswithcode.com/dataset/summaries-of-genetic-variation for details.

The data comprise

• csv/coal.csv: 100,000 simulations with $\theta\sim\mathrm{Uniform}\left(2,10\right) $ and $\rho\sim\mathrm{Uniform}\left(0,10\right) $, where $\theta $ is the scaled mutation rate and $\rho $ is the scaled recombination rate.
• csv/coalobs.csv: 100 simulations with the same prior distribution as for csv/coal.csv.
• csv/coaloracle.csv: 1,000,000 simulations with $\theta\sim\mathrm{Uniform}\left(0,10\right) $ and $\rho\sim\mathrm{Uniform}\left(0,10\right) $.

Getting the data from scratch

Run

• make csv to download data and regenerate the CSV files (Rscript and curl must be installed).
• make rda.shasum to regenerate the checksum file to validate the integrity of the input data (shasum and curl must be installed).
• make rda/validate to validate the rda input files checksums (shasum and curl must be installed).