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License: GNU Affero General Public License v3.0
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pharmacogenomics's Introduction
Pharmacogenomics for GPCRs
- Python 3.8.10
- Requests
- Biopython
- Matplotlib
- Pandas
- (optional) CrossMap 0.7.0
- tabix 1.10.2
- (optional) samtools 1.10.2
- (optional) bcftools 1.10.2
- Execute
wget.sh
to download files.
- 54KJPN (
./data/54KJPN
)
- 1KGP (
./data/1KGP
)
- AlphaMissense (
./data
)
- (optional) Great Ape Genome Project (
./data/GAGP
)
- Execute
preprare.py
. The script depends on the following sites:
- Execute
analyze-*.py
and analyze-*.ipynb
.