thorerismann / flora-buckets Goto Github PK

Format a table of watch list and balck list species as in the preceding code output.

Deprecation warning:

/tmp/ipykernel_7355/3126014015.py:15: FutureWarning: Dropping of nuisance columns in DataFrame reductions (with 'numeric_only=None') is deprecated; in a future version this will raise TypeError. Select only valid columns before calling the reduction. conc["sprouted"] = conc[ccounts].max(axis=1)

currently not listed as a contributor

Chart from Infoflora redlist needs to be recaptured and the caption erased.

Deprecation warning:
"/tmp/ipykernel_15747/3455561462.py:12: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
data = data.append(add_these)"

Make a new recomendations column with the following characteristics to summarize the recomendations from the three sources:

1. at least 1 yes and at least 1 no
2. at least 1 yes and 0 no
3. at least 1 no and 0 yes
4. 0 yes and 0 yes

Interested in:

1. whether each of these groupings had seeds that sprouted
2. how many "mixed message" species there are (where the experts contradict themselves)

NOTE: Can be done just on the day of the 28th of november so that all species are comparable.

Modify the legend in 8 to include the following dictionary:

legendkey = {"ongen" = "identified to genus", "ni" = "neophyte", "ns" = "culturally significant neophyte","WL = Watchlist", "BL" = "Blacklist", "LC = Least Concern", VU = "vulnerable", "NT" = "Near Threatened", "EN" = "Endangered","NE" = "Not Evaluated", "DD" = Data Deficient" }

legendkey for 11:

legendkey = {"WL = Watchlist", "BL" = "Blacklist"}

legend in 13:

legendkey = {"LC = Least Concern", VU = "vulnerable", "NT" = "Near Threatened", "EN" = "Endangered","NE" = "Not Evaluated", "DD" = Data Deficient" }

Reduce size of images used to decrease size of .html and file rune time.

Remove the black box around the picture

Images need to be resized to better fill up horizontal space

Missing references for the following citations:

"SMITH2006312"
"HICKS2016"

Deprecation warning : /tmp/ipykernel_4372/3455561462.py:12: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
data = data.append(add_these)

Cannot locate the reference column

Before the germination experiment was run, three different references were consulted. These references sometimes offered conflicting information on how best to germinate the wildflower seeds. This section compares the expected germination based on the reference works to what was actually observed.

The citations do not appear properly from the .bib file when processed through jupyter book.

Make Swiss topo map to demonstrate layout of surveys

The second new coding block under the results section needs to be updated with the following:

• plastic trays need to be done in the same way as total and concrete containers
• plot index/cutoff point versus number of successful /unsuccesful species in the plastic trays/concrete containers/total as illustrated in the coding loop

This graph is of the count of all seedlings on November 28th so all the data is directly comparable.

The text and images are not aligned in the analysis.html file.

The images begin to the left of the text.

use this doctoral thesis:
https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/456762/Full_Thesis_KV_A4.pdf?sequence=2&isAllowed=y

add this paper:
https://onlinelibrary.wiley.com/doi/epdf/10.1111/icad.12071