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Home Page: http://hsc-proteomics.uchsc.edu
License: MIT License
Utilities used in the Hansen Lab
Home Page: http://hsc-proteomics.uchsc.edu
License: MIT License
Data consists of 4 gels, effectively with 3 columns (a,b,c) and 17 rows each.
|-|a|b|c|
|1|....
|2|...
Each cell is run independently and the results for each row is collated into a result file, ie there are 4*17 result files (although some were not run/generated so there is in fact several fewer) in Excel format.
for each gel
for each result file
for each protein accession
determine if the protein was found
if so, extract abundance, (a/b), (a/c), (b/c), etc.
else register an empty line
dump results to file (result 4 files, x proteins each)
for each protein (ie 17 times)
for each (a/b), (a/c), etc
calculate total average
scan for sections separated by 2 or more empty lines, average each section
across result files, for each protein
generate graphic
for each (a/b), (a/c), etc
if all have the same number of sections
list for each section
else
list average
Result:
| protein x | graphic | a/b | a/c, a/c | b/c | ...
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