Comments (3)
In the man pages there should be a function summarizeToGene that works on lists of matrices. Itβs been exported for a few releases, but itβs not discussed in vignette i think.
from tximport.
Thanks, and sorry but I missed the issue on posting to the Bioconductor support site here. I will close and continue on Bioconductor support site if I can't get that to work.
from tximport.
No worries. Let me know if you have any issues.
from tximport.
Related Issues (20)
- Outdated vignette? HOT 1
- Move Alevin import code to C++ HOT 3
- Missing release tags HOT 1
- Add option to import only whitelisted barcodes from alevin HOT 2
- ignoreAfterBar does not apply with txOut=T and countsFromAbundance != "no" HOT 1
- lose transcript names for salmon inferential replicates
- `ignoreAfterBar` not used if `txOut=TRUE` HOT 5
- cann't import kallisto abundance.h5/.tsv HOT 4
- Recomended count scaling method for DTU analysis HOT 2
- Returns TPM when abundanceCol is set to any value for type='rsem' HOT 1
- Read in files in parallel HOT 4
- Tximport issue with new R version HOT 2
- Which measure to use for gene Fold change analysis between pre- and post-treatment samples and for gene comparison within a sample HOT 1
- error in 1:nrow(m): argument of length 0 HOT 1
- import using tximport for the rsem count table to get integers? HOT 3
- Dealing with multispecies using tximport HOT 4
- Different length and counts depending on the number of loaded samples HOT 1
- tximport of feature counts? HOT 1
- tximport of kallisto h5s generated with multiple threads is not deterministic HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. πππ
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google β€οΈ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from tximport.