Comments (1)
mikelove
commented on August 28, 2024
Good question. This GitHub repository of tximport is mainly for facilitating viewing the source code, as well as the occasional feature request (most software questions are reported on the Bioc support site).
So the primary releases should be drawn not from GitHub but from the Bioconductor git server which is the canonical home for tximport and other packages. I don't think Bioconductor adds release tags however. That would be a good question for the Bioconductor developer mailing list.
from tximport.
Related Issues (20)
- Outdated vignette? HOT 1
- Move Alevin import code to C++ HOT 3
- Add option to import only whitelisted barcodes from alevin HOT 2
- ignoreAfterBar does not apply with txOut=T and countsFromAbundance != "no" HOT 1
- lose transcript names for salmon inferential replicates
- `ignoreAfterBar` not used if `txOut=TRUE` HOT 5
- cann't import kallisto abundance.h5/.tsv HOT 4
- Import processed data HOT 3
- Recomended count scaling method for DTU analysis HOT 2
- Returns TPM when abundanceCol is set to any value for type='rsem' HOT 1
- Read in files in parallel HOT 4
- Tximport issue with new R version HOT 2
- Which measure to use for gene Fold change analysis between pre- and post-treatment samples and for gene comparison within a sample HOT 1
- error in 1:nrow(m): argument of length 0 HOT 1
- import using tximport for the rsem count table to get integers? HOT 3
- Dealing with multispecies using tximport HOT 4
- Different length and counts depending on the number of loaded samples HOT 1
- tximport of feature counts? HOT 1
- tximport of kallisto h5s generated with multiple threads is not deterministic HOT 1
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