theislab Goto Github PK

expimap_reproducibility

extended-single-cell-best-practices-container

Hosting the container for the extended single-cell best-practices book

feature-attribution-sc

filtration_curves

Code for the KDD 2021 paper 'Filtration Curves for Graph Representation'

flexible_priors

Using a VAE model with flexible priors for modelling scRNA-seq data

flowvi

flowVI: Flow Cytometry Variational Inference

gastrulation_analysis

geome

gh-dashboard

A dashboard of everything in the theislab GitHub repository

gobi_single_cell

Single-cell worksheet and notes for the GoBI bachelor course 2021

graph_abstraction

Generate cellular maps of differentiation manifolds with complex topologies.

graphcompass

GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems

greatpy

GREAT algorithm in Python

gut_lineage

gwas-scrnaseq-integration

A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS

hadge

Comprehensive pipeline for donor demultiplexing in single cell

hadge-reproducibility

hpa_reproducibility

Reproducible code for the scRNA-seq analyses in the paper 'The neuroendocrine response to stress at single-cell resolution" by Lopez et al. 2020.

hrca-reproducibility

Scripts related to the Human Retina Cell Atlas (Chen / Theis labs).

icml_cbw_2022_clcvae

Notebooks containing the class, training plans and results for clcvae

idtrack

Cross-Temporal and Cross-Database Biological Identifier Mapping

ifcseq

IFC-Seq: predicting single-cell gene expression for Imaging Flow Cytometry data

impa

integraph

interaction-tools

Information about cell-cell interaction tools and examples of how they are used

interactive_plotting

intercode

interpretableautoencoders

invae

Invariant Representation learning

ipsc_ipd_analysis

The analysis scripts that were used for the analysis of iPSc iPD patient and cell line data.