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This project uses the OWLApi to create an OWL ontology, in RDF/XML format, based on the content of standard SNOMED CT RF2 files.

Home Page: http://www.termmed.com

License: Apache License 2.0

Java 100.00%
somed snomed-ct ontology owl-ontology owl owl-api concrete-domains-conversion

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rf2-to-owl's Issues

NullPointerException

hi, I ran the jarfile, but got the exception like:


(base) sh-4.2$ java -jar rf2-to-owl-0.0.4.jar -mode rf2-to-owl -rf2Folder /home/s2020017/work/snomed-owl-toolkit/SNOMED_CT/SnomedCT_InternationalRF2_PRODUCTION_20200731T120000Z/Snapshot -output ontology.owl
log4j:WARN No appenders could be found for logger (com.termmed.owl.util.FileHelper).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Exception in thread "main" java.lang.NullPointerException
at java.io.File.(File.java:277)
at com.termmed.owl.RF2Parser.parse(RF2Parser.java:235)
at com.termmed.owl.Runner.main(Runner.java:81)

Could you help me to solve it? Thank you so much!

rf2-to-owl English only?

Hi everyone,

It seems that rf2-to-owl has English (en-us) as annotation language hardwired, and it happily ignores other languages without warning. Any plans on getting the tool to accept whatever language the RF2 files are in?

Thanks.

Fernando

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