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Thomas G. Close, PhD

  • šŸ”­ Iā€™m currently working on frameworks for neuroimaging analysis pipelines
  • šŸŒ± Iā€™m currently learning Kubernetes and PyTorch
  • šŸ‘Æ Iā€™m looking to collaborate on open-source scientific software and cerebellar neuroscience projects
  • šŸ¤” Iā€™m looking for help with productive ways to find/read/write good scientific papers
  • šŸ’¬ Ask me about Neuroimaging, informatics, cerebellar neuroscience, Python, XNAT
  • šŸ“« How to reach me: tomclose @ BlueSky, tomgclose @ X
  • šŸ˜„ Pronouns: He/him
  • āš” Fun fact: There are more neurons in the cerebellum than the rest of the brain combined

Tom Close's Projects

neurofitter icon neurofitter

Neurofitter is a software package for parameter tuning of electrophysiological neuron models.

neuronvisio icon neuronvisio

A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment

nineml-python icon nineml-python

A Python library for reading, parsing, validating and writing the 9ML (http://nineml.net) object model

nineml-spec icon nineml-spec

Specification of the NineML model description language.

nipy icon nipy

Neuroimaging in Python FMRI analysis package

nipype icon nipype

Workflows and interfaces for neuroimaging packages

numericalfibregenerator icon numericalfibregenerator

Numerical fibre generator is a software toolset for the generation of numerical phantoms to test diffusion MRI tractography algorithms

pybids icon pybids

Python package to access BIDS datasets

pydra-dcm2niix icon pydra-dcm2niix

Pydra task interface for Dcm2niix DICOM to NIfTI conversion utility

pydra-nixutils icon pydra-nixutils

A collection of Pydra task interfaces for common *nix utilities

pyfouts icon pyfouts

Python implementation of Fourier Tract Sampling dMRI tractography model

pynn icon pynn

A Python package for simulator-independent specification of neuronal network models.

pype9 icon pype9

Python pipelines to simulate and manipulate neuronal models, and networks thereof, described in NineML (http://nineml.net)

pytest-timeout-pass icon pytest-timeout-pass

Pytest plugin to initialise long-running processes and then kill them after the initialisation has finished and mark them as passed

python-neo icon python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

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