Tom Close's Projects
Neurofitter is a software package for parameter tuning of electrophysiological neuron models.
A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment
Scripts to aid NIF reporting
A collection of 9ML example component classes
A Python library for reading, parsing, validating and writing the 9ML (http://nineml.net) object model
Specification of the NineML model description language.
Neuroimaging in Python FMRI analysis package
Workflows and interfaces for neuroimaging packages
Numerical fibre generator is a software toolset for the generation of numerical phantoms to test diffusion MRI tractography algorithms
Python tutorial to be given at OCNC
Python package to access BIDS datasets
Pydra Dataflow Engine
Pydra task interface for Dcm2niix DICOM to NIfTI conversion utility
A collection of Pydra task interfaces for common *nix utilities
Pydra tutorial
PyDSTool main development repo
Python implementation of Fourier Tract Sampling dMRI tractography model
A Python package for simulator-independent specification of neuronal network models.
Python pipelines to simulate and manipulate neuronal models, and networks thereof, described in NineML (http://nineml.net)
Pytest plugin to initialise long-running processes and then kill them after the initialisation has finished and mark them as passed
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
Quantities package for the python programming language