Daf.jl is a Julia package which provides a uniform generic interface for
accessing 1D and 2D data arranged along some set of axes. This is a much-needed generalization of the
AnnData functionality. This package (Daf.py
) is a wrapper around the Julia
package that allows accessing Daf
data from Python, using the
JuliaCall package.
Just pip install daf
, like installing any other Python package.
The Python package provides the same API as the Julia package, with the following modifications:
- (Most) functions are exposed as member functions of the
DafReader
andDafWriter
classes (e.g., writereader.get_scalar("version")
in Python instead ofget_scalar(reader, "version")
in Julia). - There is no
!
suffix for functions that modify the data (e.g., writewriter.set_scalar("version", "1.0")
in Python instead ofset_scalar!(writer, "version", "1.0")
in Julia. Daf.jl
supports importing and exportingAnnData
objects. However, since it is a Julia package, these objects are not Pythonanndata
objects; instead they use the implementation provides by the Muon.jl Julia package. That is, to import/exportAnnData
betweenDaf
and Python, your best bet is to go throughh5ad
files.
See the Python API documentation (latest published: TODO, head revision: here) for details.
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