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salsa

SALSA: A tool to scaffold long read assemblies with Hi-C data

scripts

General scripts used in the lab. Almost all of them are in core perl, i.e require no modules that don't already come with a perl installation. These script are currently in use by the Lab, so expect full support. This material is based upon work supported by the National Science Foundation under Grant Number EAR-1035955. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

sda

Segmental Duplication Assembler (SDA).

sedef

Identification of segmental duplications in the genome

sis

a program to generate draft genome sequence scaffolds for prokaryotes

smartdenovo

Ultra-fast de novo assembler using long noisy reads

smsk_popoolation

Snakemake pipeline for Popoolation and Popoolation2

soba

spades

SPAdes Genome Assembler

sra-tools

SRA Tools

stock-predictor-v4

A Deep RL model for stock prediction with reward mechanisms.

stock-price-prediction-using-lstm-and-technical-indicators

In this Jupyter Notebook, I've used LSTM RNN with Technical Indicators namely Simple Moving Average (SMA), Exponential Moving Average (EMA), Moving Average Convergence Divergence (MACD), and Bollinger Bands to predict the price of Bank Nifty.

stock_analysis_for_quant

Various Types of Stock Analysis in Excel, Matlab, Power BI, Python, R, and Tableau

stock_movement_prediction

Predictive Model for Future Stock Price Movement using TensorFlow and Keras

strigagenome

supernova

10x Genomics Linked-Read Diploid De Novo Assembler

syri

Synteny and Rearrangement Identifier

tigmint

⛓ Correct misassemblies using linked reads

treecut

Find nodes in hierarchical clustering that are statistically significant

tsa4

R code for graphics of Time Series Analysis and Its Applications, Ed 4

tutorials

vcfr_documentation

Documentation for vcfR

wgddetector

windowmasker

wtdbg2

A fuzzy Bruijn graph approach to long noisy reads assembly