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2020-stacked-dot-plots

agrenseq

agrenseq_glm

allhic

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

ampril-genomes

scripts for the project of seven thaliana genomes assembly

annotate_cobragenome

Demonstration for annotating large snake genome

arcs

Scaffold genome sequence assemblies using 10x Genomics data

assemblage

Tools for working with second gen assemblies, fasta sequences, etc

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

astsa

R package to accompany Time Series Analysis and Its Applications: With R Examples

awesome-10x-genomics

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

bamdeal

BamDeal: a comprehensive toolkit for bam manipulation

barcrawler

easy to use QC package for 10X genomics barcoded reads

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

bin

scripts

biocode

Bioinformatics code libraries and scripts

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioinformatics-training

Bioinformatics training resources

bioinfoutilities

Bioinformatics scripts

biotools

blastgraphmetrics

Evaluation of BLAST-based edge-weighting metrics used for homology prediction with the Markov Clustering algorithm

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

chan.py

开放式的缠论python实现框架，支持形态学/动力学买卖点分析计算，多级别K线联立，区间套策略，可视化绘图，多种数据接入，策略开发，交易系统对接；

chanlun-pro

基于缠中说禅所讲缠论理论，以便量化分析市场行情的工具

chatpaper

Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文总结+润色+审稿+审稿回复

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chromosomer

A reference-assisted assembly tool for producing draft chromosome sequences.

circos_pangenome

Calculates overlap of multiple genomes and prepares files for CIRCOS visualization software

dbg2olc

The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

devilyuan

DevilYuan股票量化系统