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gretna

A Graph-theoretical Network Analysis Toolkit in MATLAB

harfi_scripts

HARFI processing

hcp-diffusion-dcm

Scripts used in Experiment 2 of my PhD, using tractography and DCM on the HCP dataset

hcp_scn_firstbreak

Sample code for analysis detailed in "Modular Architecture and resilience of structural covariance networks in first-episode antipsychotic naive psychoses"

idh_prediction

Use of Deep Learning to Predict IDH status from MR Imaging

ironsmithqsm

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.

kde_ebm

Newer version of the KDEEBM code

lihang-code

《统计学习方法》的代码实现

m2g

NeuroData's MRI to Graphs (m2g) - structural connectome estimation package and pipeline

machine-learning-roadmap

A roadmap connecting many of the most important concepts in machine learning, how to learn them and what tools to use to perform them.

macos-simple-kvm

Tools to set up a quick macOS VM in QEMU, accelerated by KVM.

mdt

Microstructure Diffusion Toolbox

multibrain

A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!

neuroparc

neuroshare

A fine collection of shared neuroimage databases.

niftydialogeffects

Nifty Modal Dialog Effects

niftynotification

effects for android notifications

nvidia-docker

Build and run Docker containers leveraging NVIDIA GPUs

pd_scn

Genetics within structural covariance networks of PD

petpvc

Partial Volume Correction in PET

pmn-and-dmn-ica-template

practicalai

A practical approach to learning machine learning.

presurfer

Scripts to prepare MP2RAGE for Freesurfer

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

prostate_mri

protocols

Generic acquisition protocol for quantitative MRI of the spinal cord

ptfce

Probabilistic Threshold-Free Cluster Enhancement of Neuroimages

ptfce_spm

pTFCE SPM Toolbox

pynets

A Fully-Automated Workflow for Reproducible Ensemble Sampling of Functional and Structural Connectomes

reorient

A tool for reorienting and cropping MRI data