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Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
Copy number variant detection from targeted DNA sequencing
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
Concordance and contamination estimator for tumor–normal pairs
Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
Workflow Execution Engine using WDL
A new CNV calling method for DNA-seq data
Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
Pipeline for analysing data from whole-exome sequencing (WES) of circulating tumour DNA (ctDNA)
Somatic Variant Call for ctDNA
R package to work with ctDNA sequencing data
cutadapt removes adapter sequences from sequencing reads
Analytical Apps for Python. Dash Is Productive™
:bar_chart: Path to a free self-taught education in Data Science!
A list of deep learning implementations in biology
Tools to process and analyze deep sequencing data.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Bioinformatics pipelines for processing transciptome-based exon capture data in population genomic analyses
my notes on whole exome and whole genome sequencing analysis
Tools for working with genomic and high throughput sequencing data.
Extensible quality control dashboard built around FASTQ assessment.
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Models and APIs for Genomic data. RETIRED 2018-01-24
Data intensive science for everyone.
Official code repository for GATK versions 4 and up
A shell script which implements GATK pipeline for variant calling.
Workflows for somatic short variant discovery with GATK4
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.