qiime2 pipeline are used for human gut microbiome analysis
incuding 16s ITS 18s sequencing data
interactive plot is used for prevalence and abundance analysis.
biomarker the script are used to conduct LEfSe analysis using R package 'microbiomeMarker'
qiime2_analyse qiime2 analysis pipeline for ITS and 18S sequencing data.
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including raw data and metadata prepared
here we introduce MeSH to curate disease
get the genus table, and process it to relative abundance and long format
we introduce ncbi taxonomy id to annotate the taxon(genus)