srithegreat / lifebytes_singlecell

Resources on single cell

lifebytes_singlecell

Resources on single cell

10 x chromium single cell datasets

These datasets are freely available to download at https://support.10xgenomics.com/single-cell-gene-expression/datasets

Single cell sequencing powerpoint

Compiled from various resources online, gives a general idea on the technique, the methodology and available popular platforms for creating library and sequencing. I have also including data from three recent papers and tried to depict how the data is analyzed. Check the

Single_cell_sequencing.pptx

Web-based single cell pipeline

GRANATUM (http://ilab.hawaii.edu:8101)

Single cell data repos from Hemberg lab and published papers

https://hemberg-lab.github.io/scRNA.seq.datasets/

scRNASeqdb

https://bioinfo.uth.edu/scrnaseqdb/

[xCell]

xCell: digitally portraying the tissue cellularheterogeneity landscape [xcell]: https://github.com/srithegreat/lifebytes_singlecell/blob/master/Aran_et_al-2017-Genome_Biology.pdf

R Toolkit for single cell RNA-Seq

SEURAT

http://satijalab.org/seurat/

Moore's Law in Single Cell

https://arxiv.org/pdf/1704.01379.pdf