Comments (3)
mguaypaq
commented on June 29, 2024
Yikes, that's a big issue yes!
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jcohenadad
commented on June 29, 2024
oh gosh, good thing you tested this @joshuacwnewton (hopefully you were not at ~/ 😅 )
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joshuacwnewton
commented on June 29, 2024
Thankfully I was just in ~/data (which is a folder I created in response to... ALSO deleting the data/ folder just a few days ago).
Because I had deleted everything once already, I was mostly starting fresh, so not much else was deleted. 😆
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Related Issues (20)
- `ValueError`: `module://matplotlib_inline.backend_inline is not a valid value` when running SCT scripts in Jupyter notbooks HOT 11
- Cannot checkout a release HOT 5
- Reuse of warping field should not happen if SCT version evolved HOT 2
- Label-based transformation during template registration is wrong HOT 14
- Different results when using `sct_deepseg` models trained with nnUNet in 3D Slicer HOT 1
- `ValueError: shapes not aligned` when generating QC report for BOLD data HOT 3
- Update documentation to explain how to integrate nnUNet models into 3D Slicer HOT 8
- Deprecate `sct_deepseg_{sc,lesion,gm}` and move the models to `sct_deepseg`
- Deduplicate "sct_apply_transfo + label dilation" code snippet in `sct_register_to_template` script
- Track upstream packages to determine when we can upgrade to `numpy==2.0.0` HOT 3
- How to run pytest via VSCode? HOT 10
- PermissionError: [Errno 13] Permission denied: '/tmp/sct_qc.00.lock' during QC report generation on `joplin` HOT 4
- Move caching logic from callers to `sct_straighten_spinalcord` itself
- Add edge (mirror) padding as preprocessing before inference for monai models HOT 1
- `keep_largest_object` function exists in two scripts HOT 1
- Add entry `-p sct_deepseg` HOT 2
- Flattening changes the image intensity value HOT 1
- Add `-x label` to `sct_register_multimodal`
- Add detrending to sct_fmri_compute_tsnr
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