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Name: Sophia
Type: User
Name: Sophia
Type: User
R and bash scripts for sequence processing and analysis of 16S amplicon sequencing data
16S SNAPP on Python 3
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
A curated list of nextflow based pipelines
Anaconda turns your Sublime Text 3 in a full featured Python development IDE including autocompletion, code linting, IDE features, autopep8 formating, McCabe complexity checker Vagrant and Docker support for Sublime Text 3 using Jedi, PyFlakes, pep8, MyPy, PyLint, pep257 and McCabe that will never freeze your Sublime Text 3
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy and maintain. Automate everything from code deployment to network configuration to cloud management, in a language that approaches plain English, using SSH, with no agents to install on remote systems. https://docs.ansible.com.
Ansible role to install IRIDA using Galaxy in a docker.
Install micromamba, and optionally create a base conda environment.
Awesome resources related to Galaxy project
A comparison of different Oxford Nanopore basecallers
Proof of concept to use ansible + Lmod to deploy a bioinformatics server
Pipelines e scripts para análises em Bioinformática
Official git repository for Biopython (originally converted from CVS)
A PyTorch Basecaller for Oxford Nanopore Reads
Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
A curated list of practical business machine learning (BML) and business data science (BDS) applications for Accounting, Customer, Employee, Legal, Management and Operations (by @firmai)
GATK RNA-Seq Variant Calling in Nextflow
Consensus assembly and variant calling workflow.
:ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
DAnIEL: a user-friendly web server for fungal ITS amplicon sequencing data
code for Data Science From Scratch book
Template for a data science project
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
DMPTool version of the DMPRoadmap codebase
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.