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Final output file size 0 about plass HOT 2 OPEN

taylorreiter avatar taylorreiter commented on June 19, 2024
Final output file size 0

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Comments (2)

milot-mirdita avatar milot-mirdita commented on June 19, 2024

Could you try to decrease the minimum translated ORF length with the --min-length parameter?
Something between 25 to 30 should work fine. The default translated fragment length of 45 is too long to fit into the 101 bp long reads.

Update: I tried it out locally, the aa_6f_long database has a reasonable size (instead of 0) if I pass a shorter min-length.

We should handle this case somehow better :/

By the way, if you want a set of stickers (see https://twitter.com/thesteinegger/status/1201076220957315074), send me your address to milot at mirdita de.

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taylorreiter avatar taylorreiter commented on June 19, 2024

thank you so much for the quick response! I'll give this a try and report back.

Just saw your update -- thank you for testing this out!

@luizirber received two sticker sets and gave one to me since he knows I'm a plass enthusiast. Thank you!

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