taylorreiter Goto Github PK
Name: Taylor Reiter
Type: User
Company: Arcadia Science
Twitter: ReiterTaylor
Location: Philadelphia, PA
Blog: taylorreiter.github.io
Name: Taylor Reiter
Type: User
Company: Arcadia Science
Twitter: ReiterTaylor
Location: Philadelphia, PA
Blog: taylorreiter.github.io
Downloading files from JGI using the API
exploring circular MAGs with spacegraphcats
Testing amino acid abundance estimation pipelines
test rf reg on ibd fecal calprotectin measurements
metacohort of illumina paired end gut microbiome metagenomes from patients with colorectal cancer.
Dissertation writing for PhD at UC Davis
Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.
Exploring Bacillus subtilis pangenome in metagenomes
Test spacegraphcats protein queries using PFAM orthologs against CAMI low
using orpheum on spacegraphcats nbhds to predict open reading frames in reads
benchmarking orpheum ORF translation of sequencing reads on sequencing libraries that were assembled into prokaryotic genomes in RefSeq
evaluating whether there are shared amino acid kmers in protein sequences from different pfam families
spacegraphcats on antibiotic resistance genes over time
binder for mini spacegraphcats bin completion use case
Visualizing dominating sets from spacegraphcats
demo for sourmash taxonomy dev. gather -> krona plot via sourmash taxonomy.
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
demo workflow to detect mobile genetic elements in metagenomes
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