Comments (2)
I do remember similar errors, but only spotted the issue now, sorry. I think that the changes in PR #9 might fix this -- but if not, I'll revisit once this is merged.
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This seems to have been a bug in some previous biomart version(s), see e.g. the testing of the penultimate commit in PR #9 before it was merged, which produces exactly this error (here: https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth/runs/419054877). It went away with an update of the biomart version used in the sleuth.yaml
environment file, defining the conda environment for the sleuth_init rule. So I'll close this for now, but feel free to reopen should this reoccur in the future.
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Related Issues (17)
- Changes in `units.tsv` do not promt a rerun of the workflow
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