Comments (1)
Thanks! As the readme says, the usage is described in the workflow catalog, see here: https://snakemake.github.io/snakemake-workflow-catalog?usage=snakemake-workflows/rna-seq-kallisto-sleuth
When following the steps over there, you get a correct deployment of the workflow including the template config. It is no longer best practice to simply clone snakemake workflows. Instead one uses them as modules like shown in the catalog link above. The advantage is that it becomes very easy to follow the upstream versions and also to compose multiple workflows together.
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Related Issues (17)
- Changes in `units.tsv` do not promt a rerun of the workflow
- Docker run fail when using the "use this template" import HOT 2
- test if SIGNOR database can be used by SPIA pathway enrichment analysis
- I wonder if you guys had plans to add annotation to the transcriptome? HOT 1
- Get rid of checkpoints
- problem with creating new copy as a template HOT 1
- Missing input files for rule kallisto_index: HOT 2
- conda command not available despite singularity HOT 3
- InputFunctionException in line 29 .../quant.smk HOT 1
- ValidationError: 'nperm' is a required property HOT 3
- can base_level be multiple if has many groups? HOT 2
- Biomart-provoked errors in sleuth-init HOT 2
- Whitespaces in config/units.tsv HOT 3
- Error in rule diffexp_datavzrd HOT 1
- cutadapt not available? HOT 3
- Libcrypto.so.1.1 not available? HOT 5
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