smujiang / re-stained_wsis_registration Goto Github PK

Hello,
I have found your code while researching the best way to align re-stained WSIs and how to align hematoxylin WSIs from adjacent tissue cuts.

In my workflow, I have four adjacent tissue cuts with hematoxylin staining, and typical registration pipelines fail to align them, as the features from cut to cut vary more than the typical differences seen in re-stained slides.

Do you have any thoughts on how to implement or adapt this pipeline to align adjacent tissue cuts?

Thank you for any help or tips that you can provide!

Hi,
thanks for sharing your extraordinary work. I was inspired a lot by your nice work. I am a student at TU Darmstadt in Germany and currently working on whole slide image registration as my master project. But I only have a very limited amount of raw WSI for registration which is obviously not enough for optimizing and validating my algorithm. I would like to ask is it possible to share your dataset with me, not necessarily all of them? It would be nice that you can share it with me via google drive or any other online cloud which you are more comfortable with. I can pay for the costs incurred in the process, if necessary. I know that my request is a bit abrupt and rude, but I don't want to give up any possibility that you might agree to it. Anyway, I wish you all the best sincerely. Thanks in advance!
Best,
JJ

Hi,
Is it possible to register modified images after getting the offset? If so, how to proceed once I run the example code you provide?
Thank you