Coder Social home page Coder Social logo

Comments (1)

andrewdavidsmith avatar andrewdavidsmith commented on August 17, 2024

@zztin I think you are probably right about the meaning of that code. Frankly, it's a weak criterion, but it should work for generating big-picture complexity results. It would not be a great approach if the purpose were, e.g., to accurately identify SNVs. It might lose information that would help at some important locus. Also, I've only ever considered how this should work for short reads.

Unfortunately I don't think I can answer your question now and I will leave this issue open, but here's one thing that might help: the best way to use Preseq is by providing a counts histogram (or the counts themselves). That would allow you to count duplicates according to your own definition.

I'll try go address this in more detail soon.

from preseq.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.