Comments (1)
From my understanding, mr files are an extension of bed files but with extra columns. Indeed, we have a tool to convert paired end bam files to mr files, so preseq can use them. They should work just fine as long as the first columns match the bed format.
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Related Issues (20)
- Redundancy in setting up RNG HOT 2
- Cannot compile 3.1.0 with --enable-hts HOT 4
- Estimating the curve with low read count HOT 2
- Malformed file from `to-mr` HOT 6
- Duplication and gc_extrap HOT 2
- Build fails due to missing size_t definition HOT 6
- cannot install with htslib support HOT 3
- `cmath` error on mac OS v11.3.1 HOT 4
- preseq sample reads is not all from bam?
- Histogram input file 0 counts HOT 4
- ERROR: reads unsorted in: HOT 3
- to-mr produces unexpected files with garbled reads
- ERROR: max count before zero is less than min required count (4) duplicates removed HOT 2
- lc_extrap error: saturation HOT 1
- ls_extrap: too many defects, negative CI, and causes HOT 3
- c_curve and lc_extrap output format
- preseq lc_extrap HOT 2
- lc_extrap: Segmentation dump HOT 1
- What are defects in approximation? What are the disadvantages to using defect mode? HOT 1
- Best practices with low-input library with high rate of PCR duplicates HOT 4
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from preseq.