slwu89 / ecomodelmarkdowns

Stand alone markdowns with embedded shiny apps for various eco&epi models

ecomodelmarkdowns

Stand alone markdowns with embedded shiny apps for various eco and epi models

Current markdowns (November 2, 2021) are:

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ddetortrix.rmd - Nelson et al's (2013) model of temperature dependent destabilization of insect dynamics

jacobian.rmd - General purpose Jacobian calculator(s)

lotkavolterracompetition.rmd - Lotka-Volterra competion model

lotkavolterrapredation.rmd - Lotka-Volterra predation model

lpatribolium.rmd - Larvae-Pupae-Adult Tribolium model

nextgenR0.rmd - general purpose code for cal;cul;ating R0 for compartemental models using next-generation formalism (not shiny App)

outbreakresponsevaccination.rmd - ORV model based on the SIR with vaccination campaigns

parasitoidhost.rmd - Nicholson-Bailey Host-Parasitoid model AND May's Negative-Binomial parasitoid-host model

spatialparasitoidhost.rmd - Coupled map lattice model of spatially extended host-parasitoid dynamics

ricker.rmd - The Ricker ('discrete logisitic') model

rosenzweigmacarthur.rmd - Rosenzweig-MacArthur Predator-Prey model

rossmacdonald.rmd - A simple Ross-Macdonald type malaria model

seasonalseir.rmd - the seasonally forced SEIR model

sir.rmd - the unforced SIR model

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If opened in Rstudio "> Run Document" will run the App.

Otherwise see

https://github.com/objornstad/oshinys

for other ways of access.